Installation

For most users we recommend

$ pip install "cogent3[extra]"

This installs support for data visualisation (which requires Plotly) and extensions for jupyter notebooks.

Minimal installation

If you don’t need plotting, such as if you’re running on a high-performance computing system, we recommend

$ pip install cogent3

Install with developer tools

Everything we use for cogent3 development. Run this from a clone of the repository.

$ pip install -e . --group dev

Note

Installs all dependencies that can be installed using pip.

Installing the development version

$ pip install git+https://github.com/cogent3/cogent3.git@develop#egg=cogent3

Warning

The interface can change without warning.

Installing using conda / mamba

Activate your conda environment, then

(myenv) $ conda install cogent3