Projects using cogent3

If you want your projected added to this list, make a PR!

EnsemblDb3

Python API for managing and querying ensembl.org MySQL databases.

HomologSampler

Command line application for sampling related genes from Ensembl.

c3dev

Tools for development of cogent3 and replated projects.

MutationMotif

Command line tool for analysis of mutation spectra including measuring neighbouring base effects.

MutationOrigin

Command line tool for development and application of machine learning classifiers for predicting mutation origins.

geneticdistance

Compute genetic distanxce using a non-stationary Markov model of nucleotide substitutions for molecular evolutionary analyses of DNA sequences.

gnc

Model the effect of Darwinian natural selection using a non-stationary Markov model of codon substitutions for molecular evolutionary analyses of DNA sequences.