Circular Dendrogram Style#

I modify values for the scale_bar placement and for label_pad. The latter controls the spacing between the tip ends and the label text.

from cogent3.app import io

reader = io.load_json()

ens_tree = reader("data/GN-tree.json")
fig = ens_tree.get_figure("circular", width=600, height=600)
fig.scale_bar = "top right"
fig.label_pad = 0.1
fig.show()
FlyingLem TreeShrew ChimpanzeeHuman Gorilla Orangutan Rhesus HowlerMon Galago Rat Mouse OldWorld FlyingSqu Jackrabbit Cat Dog Pangolin Rhino Horse HumpbackWSpermWhale Hippo Cow Pig Llama TombBat RoundEare FreeTaile LittleBro FlyingFox DogFaced LeafNose FalseVamp Mole Hedgehog Sloth Anteater HairyArma NineBande GoldenMolMadagascarTenrec LesserEle GiantElep Aardvark AfricanEl AsianElep RockHyrax TreeHyrax Manatee Dugong Wombat Bandicoot PhascogaleCaenolest 0.06

Colouring a set of edges#

fig.style_edges(
    "AfricanEl",
    tip2="Manatee",
    legendgroup="Afrotheria",
    line=dict(color="magenta", width=2),
)
fig.show(width=650, height=600)
AfrotheriaFlyingLem TreeShrew ChimpanzeeHuman Gorilla Orangutan Rhesus HowlerMon Galago Rat Mouse OldWorld FlyingSqu Jackrabbit Cat Dog Pangolin Rhino Horse HumpbackWSpermWhale Hippo Cow Pig Llama TombBat RoundEare FreeTaile LittleBro FlyingFox DogFaced LeafNose FalseVamp Mole Hedgehog Sloth Anteater HairyArma NineBande GoldenMolMadagascarTenrec LesserEle GiantElep Aardvark AfricanEl AsianElep RockHyrax TreeHyrax Manatee Dugong Wombat Bandicoot PhascogaleCaenolest 0.06

With Contemporaneous Tips#

fig.contemporaneous = True
fig.label_pad = 0.3
fig.show(width=650, height=600)
AfrotheriaHumpbackW SpermWhaleHippo Cow Pig Llama Cat Dog Pangolin Horse Rhino FreeTaile LittleBro RoundEare TombBat DogFaced FlyingFox FalseVamp LeafNose Hedgehog MoleChimpanzee Human Gorilla Orangutan Rhesus HowlerMon Galago FlyingLem TreeShrew Mouse Rat OldWorld FlyingSquJackrabbit HairyArma NineBande Anteater SlothMadagascar TenrecGoldenMol GiantElep LesserEle Aardvark AfricanEl AsianElep RockHyrax TreeHyrax Dugong Manatee Bandicoot Wombat PhascogaleCaenolest