load_aligned_seqs#
- load_aligned_seqs(filename: str | Path, format=None, array_align=True, moltype=None, label_to_name=None, parser_kw=None, info=None, **kw)#
loads aligned sequences from file
- Parameters:
- filenamestr
path to sequence file
- formatstr
sequence file format, if not specified tries to guess from the path suffix
- moltype
the moltype, eg DNA, PROTEIN, ‘dna’, ‘protein’
- array_alignbool
if True, returns ArrayAlignment, otherwise an annotatable Alignment
- label_to_name
function for converting original name into another name.
- parser_kwdict
optional arguments for the parser
- Returns:
ArrayAlignmentorAlignmentinstance