load_aligned_seqs

load_aligned_seqs(filename, format=None, array_align=True, moltype=None, label_to_name=None, parser_kw=None, info=None, **kw)

loads aligned sequences from file

Parameters
filenamestr

path to sequence file

formatstr

sequence file format, if not specified tries to guess from the path suffix

moltype

the moltype, eg DNA, PROTEIN, ‘dna’, ‘protein’

array_alignbool

if True, returns ArrayAlignment, otherwise an annotatable Alignment

label_to_name

function for converting original name into another name.

parser_kwdict

optional arguments for the parser

Returns
ArrayAlignment or Alignment instance