Manipulating biological data#
Sequences and Alignments#
- Loading a sequence from a file
- Loading an alignment from a file or url
- Specifying the sequence molecular type
- Making an alignment from standard python objects
- Making a sequence collection from standard python objects
- Loading sequences using format parsers
- Sequences
- Protein sequences
- Sequence Collections and Alignments
- Features
- Annotation Databases
- What are the different types of
AnnotationDb
? - How to create a standalone
BasicAnnotationDb
- How to load an standalone
AnnotationDb
from a data file - How to generate a summary of an
AnnotationDb
- How to add custom features to an
AnnotationDb
- How to write an
AnnotationDb
to disk for efficient re-loading - How to query an
AnnotationDb
- How to interrogate an
AnnotationDb
- How to combine two
AnnotationDb
instances - How to assign an
AnnotationDb
to a sequence
- What are the different types of
- Molecular types
- Alphabets