GNC-alt
log-likelihood = -6710.8118
number of free parameters = 24
Global params
A>C | A>G | A>T | C>A | C>G | C>T | G>A | G>C | G>T | T>A |
0.8620 | 3.5361 | 0.9790 | 1.6698 | 2.2059 | 6.2630 | 7.9209 | 1.2265 | 0.8024 | 1.2882 |
Edge params
edge | parent | length | omega |
Galago | root | 0.5237 | 0.7906 |
HowlerMon | root | 0.1339 | 0.7906 |
Rhesus | edge.3 | 0.0640 | 0.7906 |
Orangutan | edge.2 | 0.0233 | 0.7906 |
Gorilla | edge.1 | 0.0075 | 0.7906 |
Human | edge.0 | 0.0182 | 2.6351 |
Chimpanzee | edge.0 | 0.0085 | 2.6351 |
edge.0 | edge.1 | 0.0000 | 0.7906 |
edge.1 | edge.2 | 0.0100 | 0.7906 |
edge.2 | edge.3 | 0.0366 | 0.7906 |
edge.3 | root | 0.0238 | 0.7906 |
Motif params
AAA | AAC | AAG | AAT | ACA | ACC | ACG | ACT | AGA | AGC |
0.0556 | 0.0235 | 0.0344 | 0.0556 | 0.0228 | 0.0046 | 0.0008 | 0.0289 | 0.0231 | 0.0286 |
continuation
AGG | AGT | ATA | ATC | ATG | ATT | CAA | CAC | CAG | CAT |
0.0140 | 0.0381 | 0.0186 | 0.0070 | 0.0128 | 0.0192 | 0.0196 | 0.0052 | 0.0238 | 0.0221 |
continuation
CCA | CCC | CCG | CCT | CGA | CGC | CGG | CGT | CTA | CTC |
0.0195 | 0.0062 | 0.0006 | 0.0263 | 0.0011 | 0.0009 | 0.0023 | 0.0032 | 0.0137 | 0.0078 |
continuation
CTG | CTT | GAA | GAC | GAG | GAT | GCA | GCC | GCG | GCT |
0.0125 | 0.0105 | 0.0755 | 0.0105 | 0.0303 | 0.0315 | 0.0158 | 0.0096 | 0.0014 | 0.0137 |
continuation
GGA | GGC | GGG | GGT | GTA | GTC | GTG | GTT | TAC | TAT |
0.0161 | 0.0090 | 0.0067 | 0.0133 | 0.0148 | 0.0070 | 0.0069 | 0.0213 | 0.0023 | 0.0101 |
continuation
TCA | TCC | TCG | TCT | TGC | TGG | TGT | TTA | TTC | TTG |
0.0221 | 0.0082 | 0.0015 | 0.0251 | 0.0018 | 0.0040 | 0.0201 | 0.0212 | 0.0078 | 0.0108 |