conda
apps
NotCompleted
progressive_align
info
model
model_result
tabulate_stats
ancestral_states
hypothesis
hypothesis_result
natsel
natsel_neutral
natsel_timehet
natsel_sitehet
natsel_zhang
user_function
Alignment
ArrayAlignment
Sequence
as_one_span
MolType
Alphabet
get_code()
CodonAlphabet
DnaSequence
ascii_art()
load_delimited()
FilteringParser
dict
pandas.DataFrame
head()
tail()
repr()
str()
to_string()
cogent3
alignment.quick_tree()
DistanceMatrix
cogent3.phylo.nj.nj()`
get_model()
UnionDict
list
tuple
kappa
app.apply_to()
cogent3.util.parallel.map()
alignment
sequence
genetic_code
moltype
alphabet
table
tree
x
Note
See Data Files Used in the Documentation for data the files used.