load_seq

load_seq(
    filename,
    annotation_path=None,
    format_name=None,
    moltype='text',
    label_to_name=None,
    parser_kw=None,
    info=None,
    annotation_offset=0,
    **kwargs,
)

loads unaligned sequences from file

Parameters

Name	Type	Description	Default
filename	os.PathLike | str	path to sequence file	required
annotation_path	os.PathLike | str | None	path to annotation file, ignored if format is genbank	None
format_name	str | None	sequence file format, if not specified tries to guess from the path suffix	None
moltype	MolTypeLiteral	the moltype, eg DNA, PROTEIN, ‘dna’, ‘protein’	'text'
label_to_name	Callable | None	function for converting original name into another name.	None
parser_kw	dict | None	optional arguments for the parser	None
info	dict | None	a dict from which to make an info object	None
annotation_offset	int	integer indicating start position relative to annotations	0
**kwargs	typing.Any	other keyword arguments passed to sequence loader	{}

Notes

Returns one sequence from a file. Use load_aligned_seqs or load_unaligned_seqs to get a collection.

Use cogent3.available_seq_formats() to see the supported formats and file suffixes.

Returns

Name	Type	Description
	Sequence