new_alignment#

SeqsData(*, data, alphabet[, offset, check])

The builtin cogent3 implementation of a collection of sequences underlying a SequenceCollection.

SeqDataView(*, parent, alphabet, parent_len)

A view class for SeqsData, providing methods for different representations of a single sequence.

SequenceCollection(*, seqs_data, moltype[, ...])

A container of unaligned sequences.

AlignedSeqsData(*, gapped_seqs, names, alphabet)

The builtin cogent3 implementation of a container of aligned sequences underlying an Alignment.

AlignedDataView(*, parent, seqid, alphabet)

A view class for AlignedSeqsData, providing methods for different representations of a single sequence.

Aligned(data, moltype[, name, annotation_db])

A single sequence in an alignment.

Alignment(seqs_data[, slice_record])

A collection of aligned sequences.