SeqView#
- class SeqView(*, parent: str | bytes | ndarray, alphabet: AlphabetABC, parent_len: int, seqid: str | None = None, slice_record: SliceRecordABC = None, offset: int = 0)#
Provides a view of a sequence with support for slicing operations.
This class represents a view of a sequence. It uses
SliceRecordto enable efficient slicing without altering the original sequence data.- Parameters:
- parent
the original sequence data
- alphabet
the alphabet object defining valid characters for the sequence
- seqid
the name or identifier of the sequence
- parent_len
the length of the sequence. Defaults to the length of the input sequence
- Attributes:
- alphabet
- array_value
- bytes_value
- is_reversed
- offset
- parent
- parent_len
- seqid
- slice_record
- str_value
Methods
copy([sliced])returns copy
with_offset
Notes
It utilises the alphabet object to allow providing different types such as strings or numpy arrays, corresponding to its underlying data.
- alphabet#
- property array_value#
- property bytes_value#
- copy(sliced: bool = False)#
returns copy
- Parameters:
- sliced
if True, the underlying sequence is truncated and the start/stop adjusted
- property is_reversed: bool#
- property offset: int#
- parent#
- property parent_len: int#
- property seqid: str#
- property slice_record: SliceRecordABC#
- property str_value#
- with_offset(offset: int)#